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œœœœœ@MINI CLEARED LYSATE PROTOCOL@œœœœœ
(AN ADVANCED QUICK MICRO PLASMID PREP)



  1. Reagents

    1. 25% SUCROSE (w/v)
    2. 50 mM Tris-HCl pH 8.0
    3. LYSOZYME SOLUTION :
      50ul 25 mg/ml lysozyme in 0.25M Tris-HCl pH 8.0
      100ul 0.25 M EDTA pH8.0
      (for each reaction)

    4. TRITON LYSING SOLUTION :
      2% Triton
      10 mM Tris-HCl pH8.0
      62.5 mM EDTA pH 8.0

    5. TE saturated PHENOL
    6. TE saturated Sephadex G-50

  2. Methods

    1. Transfer a single drug resistant colony to a 50 ml Erlienmeyer flask containing 10 ml 2X YT plus antibiotic at recommended concentration. Allow this to grow >12hr at 37 degrees.
    2. (optional) Remove 1 ml of culture and add 100 ul of 100 % glycerol to make a freezer stock .
    3. Then transfer the remaining culture to a 15ml Corex tube on ice. Spin the cells 6K 10' 4 degrees .
    4. Pour off the supernatant and drain the tubes over a Kimwipe or a paper towel for 5' .
    5. Resuspend the pellet in 250 ul 25% sucrose solution ( vortex hard to resuspend ). While the tubes set on ice, make the lysozyme solution.
    6. Add 150 ul lysozyme solution to Corex tubes and then transfer to a1.5 ml Eppendorf tube ; Keep on ice for a total of15'.
    7. Add 500ul triton lysing solution and mix quickly by inversion. Keep on ice and do not disturb for 15' and then microfuge for 15'.
    8. Remove viscous pellet from bottom of the tube with a Pasteur pipette and heat supernatant at 65 degrees for 5' to ppt. proteins.
    9. Microfuge for 5 min. Transfer supernatant to a new tube containing 500 ul phenol ( no chloroform ), vortex 30 sec. and spin at 4 degrees for 5'.
    10. Transfer supernatant to a fresh tube containing 50 ul 3 M NaOAc and fill tube with absolute EtOH. Chill tube at - 20 degrees for at least 10' and microfuge 10' , drain EtOH and wipe tube walls with Kimwipe to dryness.
    11. Resuspend pellet in 100ul 1XTE buffer (takes only about 5' at 65 degrees). Run over a Sephadex G-50 mini column ( remember to wash the column).
    12. Store at -20 degrees , yield is appx. 10-20 ug. Quantitate the DNA.

      * MCL plasmid preps contain lots of RNA.

Pacelabs


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